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INRA
24, chemin de Borde Rouge –Auzeville – CS52627
31326 Castanet Tolosan CEDEX - France

Dernière mise à jour : Mai 2018

Menu Logo Principal AgroParisTech Université Paris-Saclay

INRA GABI Unit

GABI : Génétique Animale et Biologie IntégrativeUnité Mixte de Recherche INRA - AgroParisTech

Publications

Our publications

Recent publications

D'Ambrosio J, Phocas F, Haffray P, Bestin A, Brard-Fudulea S, Poncet C, Quillet E, Dechamp N, Fraslin C, Charles M, Dupont-Nivet M. 2019. Genome-wide estimates of genetic diversity, inbreeding and effective size of experimental and commercial rainbow trout lines undergoing selective breeding. Genet Sel Evol. 51, 26

Erlandsson L, Ducat A, Castille J, Zia I, Kalapotharakos G, Hedstrom E, Vilotte JL, Vaiman D, Hansson SR. 2019. Alpha-1 microglobulin as a potential therapeutic candidate for treatment of hypertension and oxidative stress in the STOX1 preeclampsia mouse model. Sci Rep. 9, 8561

Crespo-Piazuelo D, Migura-Garcia L, Estelle J, Criado-Mesas L, Revilla M, Castello A, Munoz M, Garcia-Casco JM, Fernandez AI, Ballester M, Folch JM. 2019. Association between the pig genome and its gut microbiota composition. Sci Rep. 9, 8791

Vignal A, Boitard S, Thebault N, Dayo GK, Yapi-Gnaore V, Karim IYA, Berthouly-Salazar C, Palinkas-Bodzsar N, Guemene D, Thibaud-Nissen F, Warren WC, Tixier-Boichard M, Rognon X. 2019. A guinea fowl genome assembly provides new evidence on evolution following domestication and selection in galliformes. Mol Ecol Resour. 19, 997-1014

2019

Alfonso S, Blanc M, Joassard L, Keiter SH, Munschy C, Loizeau V, Bégout ML, Cousin X. 2019. Examining multi- and transgenerational behavioral and molecular alterations resulting from parental exposure to an environmental PCB and PBDE mixture. Aquat Toxicol. 208, 29-38

Arguello H, Estelle J, Leonard FC, Crispie F, Cotter PD, O'Sullivan O, Lynch H, Walia K, Duffy G, Lawlor PG, Gardiner GE. 2019. Influence of the intestinal microbiota on colonization resistance to Salmonella and the shedding pattern of naturally exposed pigs. mSystems. 4,e00021-19

Ben Jemaa S, Thamri N, Mnara S, Rebours E, Rocha D, Boussaha M. 2019. Linkage disequilibrium and past effective population size in native Tunisian cattle. Genet Mol Biol. 42, 52-61

Besson M, Allal F, Chatain B, Vergnet A, Clota F, Vandeputte M. 2019. Combining individual phenotypes of feed intake with genomic data to improve feed efficiency in sea bass. Front Genet. 10, 219

Biase FH, Hue I, Dickinson SE, Jaffrezic F, Laloe D, Lewin HA, Sandra O. 2019. Fine-tuned adaptation of embryo-endometrium pairs at implantation revealed by transcriptome analyses in Bos taurus. PLoS Biol. 17, e3000046

Bordet E, Fretaud M, Crisci E, Bouguyon E, Rault S, Pezant J, Pleau A, Renson P, Giuffra E, Larcher T, Bourge M, Bourry O, Boulesteix O, Langevin C, Schwartz-Cornil I, Bertho N. 2019. Macrophage-B cell interactions in the inverted porcine lymph node and their response to porcine reproductive and respiratory syndrome virus. Front Immunol. 10, 953

Boushaba N, Boujenane I, Moazami-Goudarzi K, Flori L, Saïdi-Mehtar N, Tabet-Aoul N, Laloë D. 2019. Genetic diversity and relationships among six local cattle populations in semi-arid areas assessed by a bovine medium-density single nucleotide polymorphism data. Animal. 13, 8-14.

Burzio V, Fitzpatrick C, Bendek M, Briones M, Farfán N, Silva V, Nardocci G, Montecino M, Boland A, Deleuze JF, Villegas J, Villota C, Silva V, Lobos L, Borgna V, Barrey E, Burzio L. 2019. Mitochondrial ncRNA targeting induces cell cycle arrest and tumor growth inhibition of MDA-MB-231 breast cancer cells through reduction of key cell cycle progression factors. Cell Death Dis, in press

Croué I, Michenet A, Leclerc H, Ducrocq V. 2019. Genomic analysis of claw lesions in Holstein cows: Opportunities for genomic selection, quantitative trait locus detection, and gene identification. J Dairy Sci. 102, in press

De La Torre Capitan A, Andueza Urra JD, Renand G, Baumont R, Cantalapiedra Hijar G, Noziere P. 2019. Digestibility contributes to between-animal variation in feed efficiency in beef cows. Animal, in press

de Verdal H, O'Connell CM, Mekkawy W, Vandeputte M, Chatain B, Begout ML, Benzie JAH. 2019. Agonistic behaviour behaviour and feed efficiency in juvenile Nile tilapia Oreochromis niloticus. Aquaculture. 505, 271-279

Dhorne-Pollet S, Crisci E, Mach N, Renson P, Jaffrézic F, Marot G, Maroilley T, Moroldo M, Lecardonnel J, Blanc F, Bertho N, Bourry O, Giuffra E. 2019. The miRNA-targeted transcriptome of porcine alveolar macrophages upon infection with Porcine Reproductive and Respiratory Syndrome Virus. Sci Rep. 9-3160

Eckart V, Yamaguchi T, Franzke K, Bergmann SM, Boudinot P, Quillet E, Kawanobe M, de Haro NA, Fischer U. 2019. New cell lines for efficient propagation of koi herpesvirus and infectious salmon anaemia virus. J Fish Dis. 42, 181-187

Fages A, …. Barrey E, …., Orlando L. 2019. Tracking five millennia of horse management with extensive ancient genome time series. Cell. in press

Faggion S, Vandeputte M, Chatain B, Gagnaire PA, Allal F. 2019. Population-specific variations of the genetic architecture of sex determination in wild European sea bass Dicentrarchus labrax L. Heredity. 122, 612-621

Fang ZH, Bovenhuis H, van Valenberg HJF, Martin P, Duchemin SI, Huppertz T, Visker MHPW. 2019. Genome-wide association study for alpha(S1)- and()alpha(S2) -casein phosphorylation in Dutch Holstein Friesian. J Dairy Sci. 102, 1374-1385

Flori L, Moazami-Goudarzi K, Alary V, Araba A, Boujenane I, Boushaba N, Casabianca F, Casu S, Ciampolini R, Coeur D'acier A, Coquelle C, Delgado JV, El-Beltagi A, Hadjipavlou G, Jousselin E, Landi V, Lauvie A, Lecomte P, Ligda C, Marinthe C, Martinez A, Mastrangelo S, Menni D, Moulin CH, Osman MA, Pineau O,Portolano B, Rodellar C, Saidi-Mehtar N, Sechi T, Sempere G, Thevenon S, Tsiokos D, Laloë D, Gautier M. 2019. A genomic map of climate adaptation in Mediterranean cattle breeds. Mol Ecol. in press.

Fraslin C, Brard-Fudulea S, D’Ambrosio J, Bestin A, Charles M, Haffray P, Quillet E, Phocas F. 2019. Rainbow trout resistance to bacterial cold water disease: two new quantitative trait loci identified after a natural disease outbreak on a French farm. Anim Genet. in press

George PBL, Lallias D, Creer S, Seaton FM, Kenny JG, Eccles RM, Griffiths RI, Lebron I, Emmett BA, Robinson DA, Jones DL. 2019. Divergent national-scale trends of microbial and animal biodiversity revealed across diverse temperate soil ecosystems. Nat Commun. 10, 1107

Gervais L, Perrier C, Bernard M, Merlet J, Pemberton JM, Pujol B, Quéméré E. 2019. RAD-sequencing for estimating genomic relatedness matrix-based heritability in the wild: A case study in roe deer. Mol Ecol Resour, in press

Gobé C, El Zaiat M, Meunier N, André M, Sellem E, Congar P, Jouneau L, Allais-Bonnet A, Naciri I, Passet B, Pailhoux E, Pannetier M. 2019. Dual role of DMXL2 in olfactory information transmission and the first wave of spermatogenesis. PLoS Genet. 15,  e1007909

Godichon-Baggioni A, Maugis-Rabusseau C, Rau A. 2019. Clustering transformed compositional data using K-means, with applications in gene expression and bicycle sharing system data. J Appl Stat. 46, 47, 65

Giuffra E, Tuggle CK, FAANG Consortium. 2019. Functional annotation of animal genomes (FAANG): Current achievements and roadmap. Annu Rev Anim Biosci. 7, 65-88

Guillocheau GM, El Hou A, Meersseman C, Esquerré D, Rebours E, Letaief R, Simao M, Hypolite N, Bourneuf E, Bruneau N, Vaiman A, Vander Jagt CJ, Chamberlain  AJ, Rocha D. 2019. Survey of allele specific expression in bovine muscle. Sci Rep. 9, 4297

Hirsch TZ, Martin-Lanneree S, Reine , Hernandez-Rapp J, Herzog L, Dron M, Privat N, Passet B, Halliez S, Villa-Diaz A, Lacroux C, Klein V, Haik S, Andreoletti O, Torres JM, Vilotte JL, Beringue V, Mouillet-Richard S. 2019. Epigenetic control of the Notch and Eph signaling pathways by the prion protein: implications for prion diseases.  Mol Neurobiol. 56, 2159-2173

Hue I, Dufort I, Vitorino Carvalho A, Laloe D, Peynot N, Degrelle SA, Viebahn C, Sirard MA. 2019. Different pre-implantation phenotypes of bovine blastocysts produced in vitro. Reproduction. 157, 163-178

Hue-Beauvais C, Aujean E, Miranda G, Ralliard-Rousseau D, Valentino S, Brun N, Ladebese S, Pechoux C, Chavatte-Palmer P, Charlier M. 2019. Impact of exposure to diesel exhaust during pregnancy on mammary gland development and milk composition in the rabbit. PLoS One, 14-e0212132

Jeandard D, Smirnova A, Tarassov I, Barrey E, Smirnov A, Entelis N. 2019. Import of non-coding RNAs into human mitochondria: A critical review and emerging approaches. Cells. 8, 286

Larsen FT, Bed'Hom B, Naghizadeh M, Kjaerup RB, Zohari S, Dalgaard TS. 2019. Immunoprofiling of peripheral blood from infectious bronchitis virus vaccinated MHC-B chicken lines - Monocyte MHC-II expression as a potential correlate of protection. Dev Comp Immunol. 96, 93- 102

Le Guillou S, Laubier J, Pechoux C, Aujean E, Castille J, Leroux C, Le Provost F. 2019. Defects of the endoplasmic reticulum and changes to lipid droplet size in mammary epithelial cells due to miR-30b-5p overexpression are correlated to a reduction in Atlastin 2 expression. Biochem Biophys Res Commun. 512, 283-288

Le Moyec L, Robert C, Triba NM, Bouchema N, Mach N, Rivière J, Zalachas-Rebours E, Barrey E. 2019. A first step toward unraveling the energy metabolism in endurance horses: Comparison of plasma nuclear magnetic resonance metabolomic profiles before and after different endurance race distances. Front Mol Biosci. 6, 45

Li JY, Bed'hom B, Marthey S, Valade M, Dureux A, Moroldo M, Pechoux C, Coville JL, Gourichon D, Vieaud A, Dorshorst B, Andersson L, Tixier-Boichard M. 2019. A missense mutation in TYRP1 causes the chocolate plumage color in chicken and alters melanosome structure. Pigment Cell Melanoma Res. 32, 381-39

Mesbah-Uddin M, Hoze C, Michot P, Barbat A, Lefebvre R, Boussaha M, Sahana G, Fritz S, Boichard D, Capitan A. 2019. A missense mutation (p.Tyr452Cys) in the CAD gene compromises reproductive success in French Normande cattle. J Dairy Sci, 102

Munyaka PM, Kommadath A, Fouhse J, Wilkinson J, Diether N, Stothard P, Estellé J, Rogel-Gaillard C, Plastow G, Willing BP. 2019.  Characterization of whole blood transcriptome and early-life fecal microbiota in high and low responder pigs before, and after vaccination for Mycoplasma hyopneumoniae.  Vaccine. in press

Plasterer C, Tsaih SW, Lemke A, Schilling R, Dwinell M, Rau A, Aue P, Rui H, Fliste MJ. 2019. Identification of a rat mammary tumor risk locus that Is syntenic with the commonly amplified 8q12.1 and 8q22.1 regions in human breast cancer patients. G3 (Bethesda). 9, 1739-1743

Rau A, Flister M Rui H, Auer PL. 2019. Exploring drivers of gene expression in the Cancer Genome Atlas. Bioinformatics. 35, 62-68 

Robic A, Morisson M, Leroux S, Gourichon D, Vignal A, Thebault N, Fillon V, Minvielle F, Bed'Hom B, Zerjal T, Pitel F. 2019. Two new structural mutations in the 5' region of the ASIP gene cause diluted feather color phenotypes in Japanese quail. Genet Sel Evol. 51, 12

Ryskaliyeva A, Henry C, Miranda G, Faye B, Konuspayeva G, Martin P. 2019. Alternative splicing events expand molecular diversity of camel CSN1S2 increasing its ability to generate potentially bioactive peptides. Sci Rep. 9, 5243

Ryskaliyeva A, Henry C, Miranda G, Faye B, Konuspayeva G, Martin P. 2019. The main WAP isoform usually found in camel milk arises from the usage of an improbable intron cryptic splice site in the precursor to mRNA in which a GC-AG intron occurs. BMC Genet. 20, 14

Savilammi T, Primmer CR, Varadharajan S, Guyomard R, Guiguen Y, Sandve SR, Vollestad LA,Papakostas S, Lien S. 2019. The chromosome-level genome assembly of European grayling reveals aspects of a unique genome evolution process within Salmonids. G3 (Bethesda). 9, 1283-1294

Skerniskyte J, Krasauskas R, Pechoux C, Kulakauskas S, Armalyte J, Suziedeliene E. 2019. Surface-Related Features and Virulence Among Acinetobacter baumannii Clinical Isolates Belonging to International Clones I and II. Front Microbiol. 9, 3116

Taussat S, Saintilan R, Krauss D, Maupetit D, Fouilloux MN, Renand G. 2019. Relationship between feed efficiency and slaughter traits of French Charolais bulls. J Anim Sci. in press

Tesniere G, Ducrocq V, Boxenbaum E, Labatut J. 2019. National organizations and management tools for genetic improvement of dairy cattle: a comparison between France, Ireland and The Netherlands. Inra Prod Anim. 32, 37-49

Thelie A, Bailliard A, Seigneurin F, Zerjal T, Tixier-Boichard M, Blesbois E. 2019. Chicken semen cryopreservation and use for the restoration of rare genetic resources. Poult Sci. 98, 447-455

Uddin MM, Hoze C, Michot P, Barbat A, Lefebvre R, Boussaha M, Sahana G, Fritz S, Boichard D, Capitan A. 2019. A missense mutation (p.Tyr452Cys) on CAD gene compromises reproductive success in dairy cattle. J Dairy Sci. 102, 6340-6356

Vandeputte M, Gagnaire PA, Allal F. The European sea bass: a key marine fish model in the wild and in aquaculture. Anim Genet. in press

Wang S, Strandberg E, Viklund A, Windig JJ, Malm S, Lewis T, Laloë D, Leroy G. 2019. Genetic improvement of canine hip dysplasia through sire selection across countries. Vet J. 248, 18-24

Yamaguchi T, Quillet E, Boudinot P, Fischer U. 2019. What could be the mechanisms of immunological memory in fish? Fish Shellfish. Immunol. 85, 3-8

Zhu T, Corraze G, Plagnes-Juan E, Montfort J, Bobe J, Quillet E, Dupont-Nivet M, Skiba-Cassy S. 2019. MicroRNAs related to cholesterol metabolism affected by vegetable diet in rainbow trout (Oncorhynchus mykiss) from control and selected lines. Aquaculture. 498, 132-142

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