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Menu Logo Principal AgroParisTech Université Paris-Saclay

INRA GABI Unit

GABI : Génétique Animale et Biologie IntégrativeUnité Mixte de Recherche INRA - AgroParisTech

2015 publications

Acosta-Alba I, Aubin J, Cariou S, Haffray P, Quittet B, Vandeputte M. 2015. The FilDor programme: combining genetic selection and environmental impact assessment of fish breeding farms. Courrier de l'Environnement de l'INRA. 65, 49-57

Andersson L, Archibald AL, Bottema CD, Brauning R, Burgess SC, Burt DW, Casas E, Cheng HH, Clarke L, Couldrey C, Dalrymple BP, Elsik CG, Foissac S, Giuffra E, Groenen MA, Hayes BJ, Huang LS, Khatib H, Kijas JW, Kim H, Lunney JK, McCarthy FM, McEwan JC, Moore S, Nanduri B, Notredame C, Palti Y, Plastow GS, Reecy JM, Rohrer GA, Sarropoulou E, Schmidt CJ, Silverstein J, Tellam RL, Tixier-Boichard M, Tosser-Klopp G, Tuggle CK, Vilkki J, White SN, Zhao S, Zhou H, and The FAANG Consortium. 2015. Coordinated international action to accelerate genome-to-phenome with FAANG, The Functional Annotation of ANimal Genomes project. Genome Biol, 16-57

Angulo L, Guyader-Joly C, Auclair S, Hennequet-Antier C, Papillier P Boussaha M, Fritz S, Hugot K, Moreews F, Ponsart C, Humblot P, Dalbies-Tran R. 2015. An integrated approach of bovine oocyte quality, from the phenotype to the genes. Reprod Fertil Dev. Ehead

Barbillon P, Thomas M, Goldringer I, Hospital F, Robin S. 2015. Network impact on persistence in a finite population dynamic diffusion model: application to an emergent seed exchange network. J Theor Biol. 365, 365-376

Baumung R, Farkas J, Boichard D, Mészáros G, Sölkner J, Curik I. 2015. Grain: a computer program to calculate ancestral and partial inbreeding coefficients using a gene dropping approach. J Anim Breed Genet. 132, 100-108

Ben Jemaa S, Boussaha M,  Ben Mehdi M, Lee JH, Lee SH. 2015. Genome-wide insights into population structure and genetic history of Tunisian local cattle using the Illumina bobine SNP50 BeadChip. BMC Genomics. 16, 677

Berthier D, Peylhard M, Dayo GK, Flori, L, Sylla S., Bolly S, Sakande H, Chantal I, Thevenon S. 2015. A comparison of phenotypic traits related to trypanotolerance in five west african cattle breeds highlights the value of shorthorn taurine breeds. PLoS One. 10, e0126498

Boichard D, Ducrocq V, Fritz S. 2015. Sustainable dairy cattle selection in the genomic era. J Anim Breed Genet. 132, 135-143

Bonhomme M, Boitard S, Clemente HS, Dumas B, Young N, Jacquet C. 2015. Genomic Signature of Selective Sweeps Illuminates Adaptation of Medicago truncatula to Root-Associated Microorganisms.    Mol Biol Evol. 32, 2097-2110  

Bonnet-Garnier A, Veillard AC, Bed'Hom B, Hayes H, Britton-Davidian J. 2015. Assessing the quality of donor cells: karyotyping methods. Methods Mol Biol. 1222, 83-99

Boussaha M., Esquerré D., Barbieri J., Djari A., Pinton A., Letaief R., Salin G., Escudié F., Roulet A., Fritz S., Samson F., Grohs C., Bernard M., Klopp C., Boichard D., Rocha D. 2015 Genome-wide study of structural variants in bovine Holstein, Montbeliarde and Normande dairy breeds. Plos One, 10: e0135931.

Brard S, Ricard A. 2015. Is the use of formulae a reliable way to predict the accuracy of genomic selection? J Anim Breed Genet. 132, 207-217  

Brard S, Ricard A. 2015. Genome-wide association study for jumping performances in French sport horses. Anim Genet. 46, 78-81   

Brard S, Ricard A. 2015. Should we use the single nucleotide polymorphism linked to in genomic evaluation of French trotter? J Anim Sci. 93, 4651-4659

Brøndum RF, Su G, Janss L, Sahana G, Guldbrandtsen B, Boichard D, Lund MS. 2015. Quantitative trait loci markers derived from whole genome sequence data increases the reliability of genomic prediction. J Dairy Sci. 98, 4107-4116

Bruford MW, Ginja C., Hoffmann I., Joost S., Orozco-terWengel P., J. Alberto F., J. Amaral A., Barbato M., Biscarini F., Colli L., Costa M., Curik I., Duruz S., Ferenčaković M., Fischer D., Fitak R., F. Groeneveld L., J. G. Hall S., Hanotte O., Hassan FU, HelsenP., Iacolina L., Kantanen K., Leempoel K., A. Lenstra J., Ajmone-Marsan P., Masembe C., Megens HJ, Miele M., Neuditschko M., Nicolazzi E.L., Pompanon F., Roosen J., Sevane N., Smetko A., Štambuk A., Streeter I., Stucki S., Supakorn C., Telo Da Gama L., Tixier-Boichard M., Wegmann D., Zhan X. 2015. Challenges for the conservation of farm animal genomic resources. Front Genet. 6, 314

Capitan A, Michot P, Baur A, Saintilan R, Hoze C, Valour D, Guillaume F, Boichon D, Barbat A, Boichard D, Schibler L, Fritz S. 2015. Genetic tools to improve reproduction traits in dairy cattle. Reprod Fert Dev. 27, 14-21

Chapuis H, Pincent C, Colleau JJ. 2015. Optimizing selection with several constraints in poultry breeding. J Anim Breed Genet.

Colleau JJ, Fritz S, Guillaume F, Baur A, Dupassieux D, Boscher MY, Journaux L, Eggen A, Boichard D. 2015. Simulation des potentialités de la sélection génomique chez les bovins laitiers. INRA Productions Animales, 28, 251-258

Corominas J, Marchesi JA, Puig-Oliveras A, Revilla M, Estellé J, Alves E, Folch JM, Ballester M. 2015. Epigenetic regulation of the ELOVL6 gene is associated with a major QTL effect on fatty acid composition in pigs. Genet Sel Evol. 47, 20

Cosson JF, Galan M, Bard E, Razzauti M, Bernard M, Morand S, Brouat C, Dalecky A, Bâ K, Charbonnel N, Vayssier-Taussat M.2015. Detection of Orientia sp. DNA in rodents from Asia, West Africa and Europe. Parasit Vectors. 8, 172

Costa C, Vandeputte M, Antonucci F, Boglione C, de Verdal H, Chatain B. 2015. Are trunk lateral line anomalies and disoriented scale pattern in European seabass (Dicentrarchus labrax L.) influenced by genetics ? Aquaculture. 448, 38-42

Dezetter C, Leclerc H, Mattalia S, Barbat A, Boichard D, Ducrocq V. 2015. Inbreeding and crossbreeding parameters for production and fertility traits in Holstein, Montbéliarde, and Normande cows. J Dairy Sci. 98, 4904-4913

Dorshorst B, Harun-Or-Rashid M, Bagherpoor AJ, Rubin CJ, Ashwell C,  Gourichon D,  Tixier-Boichard M, Hallböök F, Andersson L. 2015. A genomic duplication is associated with ectopic eomesodermin expression in the embryonic chicken comb and two duplexcomb phenotypes. PLoS Genetics. 11, e1004947

Endale Ahanda ML, Zerjal T, Dhorne-Pollet S, Rau A, Cooksey A,  Giuffra E. 2015. Impact of the genetic background on the composition of the chicken plasma miRNome in response to a stress. PLoS One. 9, e114598 (gis)

Endale Ahanda ML, Bienvenu T, Sermet-Gaudelus I, Mazzolini L, Edelman A, Zoorob R, Davezac N. 2015. The hsa-miR-125a/hsa-let-7e/hsa-miR-99b cluster is potentially implicated in Cystic Fibrosis pathogenesi. J Cyst Fibros. 14, 571-579

Eynard SE, Windig JJ, Leroy G, van Binsbergen R, Calus MPL. 2015. The effect of rare alleles on estimated genomic relationships from whole genome sequence data. BMC Genet. 16, 24

Fares-Taie L, Gerber S, Tawara A, Ramirez-Miranda A, Douet JY, Verdin H, Guilloux A, Zenteno JC, Kondo H, Moisset H, Passet B, Yamamoto K, Iwai M, Tanaka T, Nakamura Y, Kimura W, Bole-Feysot C, Vilotte M, Odent S, Vilotte JL, Munnich A, Regnier A, Chassaing N, De Baere E, Raymond-Letron I, Kaplan J, Calvas P, Roche O, Rozet JM. 2015. Submicroscopic deletions at 13q32.1 cause congenital microcoria. Am J Hum Genet. 96, 631-639

Floriot S, Vesque C, Rodriguez S, Bourgain-Guglielmetti F, Karaiskou A, Gautier M, Duchesne A, Barbey S, Fritz S, Vasilescu A, Bertaud M, Moudjou M, Halliez S, Cormier-Daire V, El Hokayem J, Nigg EA, Manciaux L, Guatteo R, Cesbron N, Toutirais G, Eggen A, Schneider-Maunoury S, Boichard D, Sobczak-Thépot J, Schibler L. 2015. C-Nap1 mutation affects centriole cohesion and is associated with a Seckel-like syndrome in cattle. Nat Commun. 6, 6894

Gaffney P,  Barr B,  Rowe JD,  Bett C, Drygiannakis I, Giannitti F,  Liu J, Trejo M,  Ghassemian M,  Martin P,  Masliah E, Sigurdson CJ. 2015. Protein profiling of isolated uterine AA amyloidosis causing fetal death in goats. FASEB Journal. Ahead, 2015

Gallopin M, Celeux G, Jaffrezic F, Rau A. 2015. A model selection criterion for model-based clustering of annotated gene expression data. Stat Appl Genet Mol Biol. 14, 413-428

Gourbeyre O, Berri M,  Lippi Y,  Meurens F, Vincent-Naulleau S, Laffitte J, Rogel-Gaillard C, Pinton P, Oswald I. 2015. Pattern recognition receptors in the gut: analysis of their expression along the intestinal tract and the crypt/villus axis. Physiol Rep. 3, e12225

Guignot F, Reigner F, Perreau C, Tartarin P, Babilliot JM, Bed’Hom B, Vidament M, Mermillod P, Duchamp G. 2015. Preimplantation genetic diagnosis in Welsh pony embryos after biopsy and cryopreservation. J Anim Sc. Ahead

Halliez S, Martin-Lanneree S, Passet B, Hernandez-Rapp J, Castille J, Urien C, Chat S, Laude H, Vilotte JL, Mouillet-Richard S, Beringue V. 2015. Prion protein localizes at the ciliary base during neural and cardiovascular development, and its depletion affects α-tubulin post-translational modifications. Sci Rep. 5, 17146

Hamzic B, Bed'Hom B, Juin H, Hawken R, Abrahamsen MS, Elsen JM, Servin B, Pinard-van der Laan MH, Demeure O. 2015. Large-scale Investigation of Response to Eimeria maxima Challenge in Broilers. J Anim Sci. 93, 1830-1840

Hamzic E, Pinard-van der Laan MH, Bed'Hom B, Juul-Madsen H. 2015. Annotation and genetic diversity of the chicken collagenous lectins. Mol Immunol. 65, 277-286

Hamzic E, Buitenhuis B, Hérault F, Hawken R, Abrahamsen MS, Servin B, Elsen JM, Pinard-van der Laan MH, Bed’Hom B. 2015. Genome-wide association study and biological pathway analysis of the Eimeria maxima response in broilers. Genet Sel Evol. 47, 91

Henry C, Saadaoui B, Bouvier F, Cébo C. 2015. Phosproteomics of the goat milk fat globule membrane: new insights into lipid droplet secretion from the mammary epithelial cell. Proteomics. 15, 2307-2317

Hernando Boigues JF, Mach N. 2015. The effect of polyunsaturated fatty acids on obesity through epigenetic modifications. Endocrinol Nutr.

Hocquette JF, Cassar Malek I, Jurie C, Bauchart D, Picard B, Renand G. 2015. Caractéristiques musculaires des bovins sélectionnés pour la croissance musculaire. Viandes et Produits Carnés. 31, 1-8

Holm JB, Sorobetea D, Kiilerich P, Ramayo-Caldas Y, Estellé J, Ma T, Madsen L, Kristiansen K, Svensson-Frej M. 2015. Chronic Trichuris muris infection decreases diversity of the intestinal microbiota and concomitantly increases the abundance of Lactobacilli. PLoS One. 10, e0125495

Honvo-Houéto, E., Truchet, S. 2015. Indirect Immunofluorescence on Frozen Sections of Mouse Mammary Gland. J. Vis. Exp. (106), e53179

Hue-Beauvais C, Koch E, Chavatte Palmer P, Galio L, Chat S, Letheule M, Rousseau Ralliard D, Jaffrezic F, Laloë D, Aujean E, Révillion F, Lhotellier V, Gertler A, Devinoy E, Charlier M. 2015. Milk from dams fed an obesogenic diet combined with a high-fat/high-sugar diet induces long-term abnormal mammary gland development in the rabbit. J Anim Sci. 93, 1641-1655

Jacquier V, Estellé J, Schmaltz-Panneau B, Lecardonnel J, Moroldo M, Lemonnier G, Turner-Maier J, Duranthon V, Oswald IP, Gidenne T, Rogel-Gaillard C. 2015. Genome-wide immunity studies in the rabbit: transcriptome variations in peripheral blood mononuclear cells after in vitro stimulation by LPS or PMA-ionomycin. BMC Genomics. 16, 26

Kornaś S, Sallé G, Skalska M, David I, Ricard A, Cabaret J. 2015. Estimation of genetic parameters for resistance to gastro-intestinal nematodes in pure blood Arabian horses. Int J Parasitol. 45, 237-242

Larzul C, Mormede E, Foury A, Billon Y, Louveau I, Merlot E, Mormede P. 2015. The cortisol response to ACTH in pigs, heritability and influence of corticosteroid-binding globulin. Animal. 9, 1929-1934   

Laubier J, Castille J, Le Guillou S, Le Provost F. 2015. No transfer of diet-derived microRNAs from mouse milk to pup tissues. RNA Biol. 12, 26-29

Lazzarotto V, Corraze G, Leprevost A, Quillet E, Dupont-Nivet M, Médale F. 2015. Three-year breeding cycle of rainbow trout (Oncorhynchus mykiss) fed a plant-based diet, totally free of marine resources: consequences for reproduction, fatty acid composition and progeny survival. PLoS One. 10, e0117609

Ledoux D, Ponsart C, Grimard B, Gatien J, Deloche MC, Fritz S, Lefebvre R, Humblot P. 2015. Sire effect on early and late embryonic death in French Holstein cattle. Animal. 9, 766-774

Lefrevre F, Cardinal M, Bugeon J, Labbe L, Médale F, Quillet E. 2015. Selection for muscle fat content and triploidy affect flesh quality in pan-size rainbow trout, Oncorhynchus mykiss. Aquaculture. 448, 569-577

Legarra A, Croiseau P, Sanchez MP, Teyssèdre S, Sallé G, Allais S, Fritz S, Moreno CR, Ricard A, Elsen JM. 2015. A comparison of methods for whole-genome QTL mapping using dense markers in four livestock species. Genet Sel Evol. 47, 6

Leroy G, Danchin-Burge C, Palhière I, SanCristobal M, Nédélec Y, Verrier E, Rognon X. 2015. How introgression events shape partition of diversity among breeds : a case study in sheep. Genet Sel Evol. 47-48

Leroy G, Phocas F, Hedan B, Verrier E, Rognon X. 2015. Inbreeding impact on litter size and survival in selected canine breeds Vet J. 203, 74-78

Luck MH, Le Moyec L, Barrey E, Triba MN, Bouchemal N, Savarin P, Robert C. 2015. Energetics of endurance exercise in young horses determined by nuclear magnetic resonance metabolomics. Front Physiol.

Mach N, Berri M, Estellé J, Leveneez F, Lemonnier G, Denis C, Leplat JJ, Chevaleyre C, Billon Y, Rogel-Gaillard C, Lepage P. 2015. Early life establishment of the swine gut microbiome and impact on host phenotypes. Environ Microbiol Rep. 7, 554-569

Madende M, Osthoff G, Patterton HG, Patterton H, Martin P, Opperman D. 2015. Characterization of casein and alpha lactalbumin of African elephant (Loxodonta africana) milk. J Dairy Sci. 98, 8308-   8318

Mahammi FZ, Gaouar SBS, Laloë D, Faugeras R, Tabet-Aoul N, Rognon X, Tixier-Boichard M, Saidi-Mehtar N. 2015. A molecular analysis of the patterns of genetic diversity in local chickens from western Algeria in comparison with commercial lines and wild jungle fowls. J Anim Breed Genet.

Mahjoub N, Dhorne-Pollet S, Fuchs X, Endale Ahanda ML, Lange E, Klupp B, Arya A, Loveland J, Lefevre F, Mettenleiter T,  Giuffra E. 2015. A 2.5 kb deletion contaning a cluster of nine microRNAs in the LAT locus of the pseudorabies virus affects the host response of porcine trigeminal ganglia during established latency. J Virol. 89, 428-442

Mialon MM, Renand G,  Ortigues-Marty I,  Bauchart D, Hocquete JF, Mounier L, Noël T, Micol D, Doreau M. 2015. Fattening performances, metabolic indicators and muscle composition of bulls fed fiber-rich vs starch-plus-lipid-rich concentrate diets. J Anim Sci. 93, 319-322

Michot P, Fantini O, Braques R, Allais-Bonnet A, Saintilan R, Grohs C, Barbieri J, Genestout L, Danchin C, Gourreau JM, Boichard D, Pin D, Capitan A. 2015. Whole-genome sequencing identifies a homozygous deletion encompassing exons 17 to 22 of the integrin beta 4 gene in a Charolais calf with junctional epidermolysis bullosa. Genet Sel Evol. 47, 37

Mignon-Grasteau S, Moreri U, Narcy A, Rousseau X, Rodenburg TB, Tixier-Boichard M, Zerjal T. 2015. Robustness to chronic heat stress in laying hens: a meta-analysis. Poultry Science. 94, 586-600

Mobuchon L, Marthey S, Boussaha M, Le Guillou S, Leroux C, Le Provost F. 2015. Annotation of the goat genome using next generation sequencing of microRNA expressed by the lactating mammary gland: comparison of three approaches. BMC Genomics. 16, 285

Mobuchon L, Marthey S, Le Guillou S, Laloë D, Le Provost F, Leroux C. 2015. Food deprivation affects the miRNome in the lactating goat mammary gGland. PLoS One. 10, e0140111   

Monneret G, Jaffrézic F, Rau A, Nuel G. 2015. Estimation d'effets causaux dans les réseaux de régulation génique: vers la grande dimension. Revue d'intelligence artificielle. 29, 205-227

Moro C, Cornette R, Vieaud A, Bruneau N, Gourichon D, Bed’Hom B, Tixier-Boichard M. 2015. Quantitative effect of a CNV on a morphological trait in chickens. PLoS One. 10, e0118706

Mouillet-Ricard S, Vilotte JL. 2015. Promiscuous functions of the prion protein family. Front Cell Dev Biol. 3, 7

Nie W, O'Brien PC, Fu B, Wang J, Su W, He K, Bed'Hom B, Volobouev V, Ferguson-Smith MA, Dobigny G, Yang F. 2015. Multidirectional chromosome painting substantiates the occurrence of extensive genomic reshuffling within Accipitriformes. BMC Evol Biol. 15, 205

Palaiokostas C, Bekaert M, Taggart JB, Gharbi K, McAndrew BJ, Chatain B, Penman DJ, Vandeputte M. 2015. A new SNP-based vision of the genetics of sex determination in European sea bass (Dicentrarchus labrax). Genet Sel Evol. 47, 68

Pauloin A, Adenot P, Hue-Beauvais C, Chanat E. 2015. The perilipin-2 (adipophilin) coat of cytosolic lipid droplets is regulated by an Arf1-dependent mechanism in HC11 mouse mammary epithelial cells. Cell Biol Int. 9999, 1-13

Petridou B. 2015. Differences in affinities between the homologous and the heterologous rabbit prolactin-receptor interaction with respect to proliferation and differentiation activities. Gen Comp Endocr. 213, 118-129

Pfeiffer C, Fuerst C, Ducrocq V, Fuerst-Waltl B. 2015. Genetic relationships between functional longevity and direct health traits in Austrian Fleckvieh cattle. J Dairy Sci. 98, 7380-7383

Picard B, Lebret B, Cassar-Malek I, Liaubet L, Berri, C Le Bihan-Duval E, Hocquette JF, Renand G. 2015. Recent advances in omic technologies for meat quality management. Meat Sci. 109, 18-26

Picard B, Lebret B, Cassar-Malek I, Liaubet L, Berri C, Bihan-Duval E, Lefevre F, Hocquette JF, Renand. Genomic markers usable for meat quality assessment. Prod Anim. 28, 183-195

Ranchoux B, Antigny F, Rucker-Martin C, Hautefort A, Péchoux C, Bogaard HJ, Dorfmüller P, Remy S,  Lecerf F, Planté S, Chat S, Fadel E, Houssaini A, Anegon I, Adnot S,  Simonneau G, Humbert M, Cohen-Kaminsky S, Perros F. 2015.  Endothelial-to-Mesenchymal Transition in Pulmonary Hypertension. Circulation. 131, 1006-1018

Rau A, Maugis-Rabusseau C, Martin-Magniette ML, Celeux G. 2015. Co-expression analysis of high-throughput transcriptome sequencing data with Poisson mixture models. Bioinformatics. 31, 1420-1427

Razzauti M, Galan M, Bernard M, Maman S, Klopp C, Charbonnel N, Vayssier-Taussat M, Eloit M, Cosson JF. 2015. A comparison between transcriptome sequencing and 16S metagenomics for detection of bacterial pathogens in wildlife. PLoS Negl Trop Dis. 18, e0003929

Recoquillay J, Pitel F, Arnould C, Leroux S, Dehais P, Moréno C, Calandreau L, Bertin A, Gourichon D, Bouchez O, Vignal A, Fariello MI, Minvielle F, Beaumont C, Leterrier C, Le Bihan-Duval E. 2015. A medium density genetic map and QTL for behavioral and production traits in Japanese quail. BMC Genomics. 16, 10

Ricard A. 2015. Does heterozygosity at the DMRT3 gene make French trotters better racers ? Genet Sel Evol. 47, 10

Richard M, Renand G, Ortigues I, Bauchart D, Hocquette JF, Mounier L, Noel T, Micol D, Doreau M. 2015. Fattening performance, metabolic indicators, and muscle composition of bulls fed fiber-rich versus starch-plus-lipid-rich concentrate diets. J Anim Sci. 93, 319-333

Rostellato R, Bonfatti, V, Larzul C, Bidanel JP, Carnier P. 2015. Estimates of genetic parameters for content of boar taint compounds in adipose tissue of intact males at 160 and 220 days of age. J Anim Sci. 93, 4267-4276

Roux PF, Boitard S, Blum Y, Parks B, Montagner A, Mouisel E, Djari A, Esquerré D, Désert C, Boutin M, Leroux S, Lecerf F, Le Bihan-Duval E, Klopp C, Servin B, Pitel F, Duclos MJ, Guillou H, Lusis AJ, Demeure O, Lagarrigue S. 2015. Combined QTL and Selective Sweep Mappings with Coding SNP Annotation and cis-eQTL Analysis Revealed PARK2 and JAG2 as New Candidate Genes for Adiposity Regulation. G3. 5, 529-2  

Roux PF, Marthey S, Djari A, Moroldo M, Esquerré D, Estellé J, Klopp C, Lagarrigue S, Demeure O. 2015. Comparison of whole-genome (13X) and capture (87X) resequencing methods for SNP and genotype callings. Anim Genet. 46, 82-86

Saintilan R, Brossard L, Vautier B, Sellier P, Bidanel J, van Milgen J, Gilbert H. 2015. Phenotypic and genetic relationships between growth and feed intake curves and feed efficiency and amino acid requirements in the growing pig. Animal. 9, 18-27

San Cristobal M, Rohart F, Lascor C, Bouffaud M, Trouilh L, Martin P, Lippi Y, Tribout T, Faraut T, Mercat MJ, Milan D, Liaubet L. 2015. Exploring transcriptomic diversity in muscle revealed that cellular signaling pathways mainly differentiate five Western porcine breeds. BMC Genomics. 16, 1055      

Sarradin P, Viglietta C, Limouzin C, Andreoletti O, Daniel-Carlier N, Barc C, Leroux-Coyau M, Berthon P, Chapuis J, Rossignol C, Gatti JL, Belghazi,M, Labas V, Vilotte JL, Beringue V, Lantier F, Laude H, Houdebine LM. 2015. Transgenic Rabbits Expressing Ovine PrP Are Susceptible to Scrapie. PLoS Pathogens. 11, e1005077

Sempéré G, Moazami-Goudarzi K, Eggen A, Laloë D, Gautier M, Flori L. 2015. WIDDE: a Web-Interfaced next generation database for genetic diversity exploration, with a first application in cattle. BMC Genomics. 16, 940

Thépot S, Restoux G, Goldringer I, Hospital F, Gouache D, Mackay I, Enjalbert J. 2015. Efficiently tracking Selection in a Multiparental Population: The Case of Earliness in Whea. Genetics. 199, 609-623

Theze B, Bernards N, Beynel A., Bouet S, Kuhnast B, Buvat I, Tavitian B, Boisgard R. 2015. Monitoring therapeutic efficacy of sunitinib using [(18)F]FDG and [(18)F]FMISO PET in an immunocompetent model of luminal B (HER2-positive)-type mammary carcinoma. BMC Cancer. 15, 534     

Tixier-Boichard M, Lescourret F. 2015. Mieux utiliser la biodiversité pour réussir la transition agro-écologique : une synthèse de l’atelier ‘Utiliser la biodiversité’. Innovations Agronomiques. 43, 41-50

Tixier-Boichard M, Verrier E, Rognon X, Zerjal T. 2015. Farm animal genetic and genomic resources from an agroecological perspective. Front Genet. 6, 1-3

Tomas J, Reygner J, Mayeur C, Ducroc R, Bouet S, Bridonneau C, Cavin JB, Thomas M, Langella P, Cherbuy C. 2015. Early colonizing Escherichia coli elicits remodeling of rat colonic epithelium shifting toward a new homeostatic state. ISME J. 9, 46-58

Valour D, Michot P, Eozenou C, Lefebvre R, Bonnet A, Capitan A, Uzbekova S, Sellem E, Ponsart C, Schibler L. 2015. Dairy cattle reproduction is a tightly regulated genetic process: Highlights on genes, pathways, and biological processes. Animal Frontiers. 5, 32-41

Verrier E, Audiot A, Bertrand C, Chapuis H, Charvolin E,  Danchin-Burge C, Danvy S, Gourdine JL, Gaultier P, Guémené D, Laloë D, Lenoir H, Leroy G, Naves M, Patin S, Sabbagh M. 2015. Assessing the risk status of livestock breeds: a multi-indicator method applied to 178 French local breeds belonging to ten species. Anim Genet Resour. 57, 105-118

Vu Manh TP, Elhmouzi-Younes J, Urien C, Ruscanu S, Jouneau L, Bourge M, Moroldo M, Foucras G, Salmon H, Marty H, Quéré P, Bertho N, Boudinot P, Dalod M, Schwartz-Cornil I. 2015. Defining mononuclear phagocyte subset homology across several distant warm-blooded vertebrates through comparative transcriptomics. Front Immunol. 6, 299

Wangkumhang P, Wilantho A, Shaw PJ, Flori L, Moazami-Goudarzi K, Gautier M, Duangjinda M, Assawamakin A, Tongsima S. 2015. Genetic analysis of Thai cattle reveals a Southeast Asian indicine ancestry. Peer J. 3, e1318    

Younes M, Robert C, Cottin F, Barrey E. 2015. Speed and cardiac recovery variables predict the probability of elimination in equine endurance events.  PloS One. 10, e0137013