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INRA
24, chemin de Borde Rouge –Auzeville – CS52627
31326 Castanet Tolosan CEDEX - France

Dernière mise à jour : Mai 2018

Menu Logo Principal AgroParisTech Université Paris-Saclay

INRA GABI Unit

GABI : Génétique Animale et Biologie IntégrativeUnité Mixte de Recherche INRA - AgroParisTech

Publications

Recent publications

Fraslin C, Brard-Fudulea S, D’Ambrosio J, Bestin A, Charles M, Haffray P, Quillet E, Phocas F. 2019. Rainbow trout resistance to bacterial cold water disease: two new quantitative trait loci identified after a natural disease outbreak on a French farm. Anim Genet. in press

Li JY, Bed'hom B, Marthey S, Valade M, Dureux A, Moroldo M, Pechoux C, Coville JL, Gourichon D, Vieaud A, Dorshorst B, Andersson L, Tixier-Boichard M. 2019. A missense mutation in TYRP1 causes the chocolate plumage color in chicken and alters melanosome structure. Pigment Cell Melanoma Res. 32, 381-39

Robic A, Morisson M, Leroux S, Gourichon D, Vignal A, Thebault N, Fillon V, Minvielle F, Bed'Hom B, Zerjal T, Pitel F. 2019. Two new structural mutations in the 5' region of the ASIP gene cause diluted feather color phenotypes in Japanese quail. Genet Sel Evol. 51, 12

Wang S, Strandberg E, Viklund A, Windig JJ, Malm S, Lewis T, Laloë D, Leroy G. 2019. Genetic improvement of canine hip dysplasia through sire selection across countries. Vet J. 248, 18-2

2019

Boushaba N, Boujenane I, Moazami-Goudarzi K, Flori L, Saïdi-Mehtar N, Tabet-Aoul N, Laloë D. 2019. Genetic diversity and relationships among six local cattle populations in semi-arid areas assessed by a bovine medium-density single nucleotide polymorphism data. Animal. 13, 8-14. 

Dhorne-Pollet S, Crisci E, Mach N, Renson P, Jaffrézic F, Marot G, Maroilley T, Moroldo M, Lecardonnel J, Blanc F, Bertho N, Bourry O, Giuffra E. 2019. The miRNA-targeted transcriptome of porcine alveolar macrophages upon infection with Porcine Reproductive and Respiratory Syndrome. Virus. Sci Rep. 9-3160 

Flori L, Moazami-Goudarzi K, Alary V, Araba A, Boujenane I, Boushaba N, Casabianca F, Casu S, Ciampolini R, Coeur D'acier A, Coquelle C, Delgado JV, El-Beltagi A, Hadjipavlou G, Jousselin E, Landi V, Lauvie A, Lecomte P, Ligda C, Marinthe C, Martinez A, Mastrangelo S, Menni D, Moulin CH, Osman MA, Pineau O, Portolano B, Rodellar C, Saidi-Mehtar N, Sechi T, Sempere G, Thevenon S, Tsiokos D, Laloë D, Gautier M. 2019. A genomic map of climate adaptation in Mediterranean cattle breeds. Mol Ecol. in press.

Godichon-Baggioni A, Maugis-Rabusseau C, Rau A. 2019. Clustering transformed compositional data using K-means, with applications in gene expression and bicycle sharing system data. J Appl Stat. 46, 47, 65

Hue I, Dufort I, Vitorino Carvalho A, Laloe D, Peynot N, Degrelle SA, Viebahn C, Sirard MA. 2019. Different pre-implantation phenotypes of bovine blastocysts produced in vitro. Reproduction. 157, 163-178

Rau A, Flister M Rui H, Auer PL. 2019. Exploring drivers of gene expression in the Cancer Genome Atlas. Bioinformatics. 35, 62-68 

Thelie A, Bailliard A, Seigneurin F, Zerjal T, Tixier-Boichard M, Blesbois E. 2019. Chicken seme cryopreservation and use for the restoration of rare genetic resources. Poult Sci. 98, 447-455

2018

Bílková B, Świderská Z, Zita L, Laloë D, Charles M, Benes V, Stopka P, Vinkler M. 2018. Domestic fowl breed variation in egg white protein expression: application of proteomics and transcriptomics. J Agric Food Chem. 66, 11854-11863

Boushaba N, Boujenane I, Moazami-Goudarzi K, Flori L, Saïdi-Mehtar N, Tabet-Aoul N, Laloë D. 2018. Genetic diversity and relationships among six local cattle populations in semi-arid areas assessed by a bovine medium-density single nucleotide polymorphism data. Animal, early print

Chassier M, Barrey E, Robert C, Duluard A, Danvy S, Ricard A. 2018. Genotype imputation accuracy in multiple equine breeds from medium- to high-density genotypes. J Anim Breed Genet. 135, 420-431

Coyral-Castel S, Ramé C, Cognié J, Lecardonnel J, Marthey S, Esquerré D, Hennequet-Antier C, Eli S, Fritz S, Boussaha M, Jaffrézic F, Dupont J. 2018. KIRREL is differentially expressed in adipose tissue from 'fertil plus ' and 'fertil-' cows: in vitro role in ovary? Reproduction. 155, 183-198.

de Verdal H, Komen H, Quillet E, Chatain B,  Allal F, Benzie JAH  Vandeputte M. 2018. Improving feed efficiency in fish using selective breeding: a review. Rev Aquacult. 10, 833-851

de Verdal H, Vandeputte M, Mekkawy W, Chatain B, Benzie JAH. 2018. Quantifying the genetic parameters of feed efficiency in juvenile Nile tilapia Oreochromis niloticus. BMC Genet. 19, 105

Demazeau G, Plumecocq A, Lehours P, Martin P, Couedelo L, Billeaud C. 2018. A new high hydrostatic pressure process to assure the microbials safety of human milk while preserving the biological activity of its main components. Front Public Health. 6, 306

Ducrocq V, Laloë D, Swaminathan M, Rognon X, Tixier-Boichard M, Zerjal T. 2018. Genomics for ruminants in developing countries: from principles to practice. Front Genet. 9, 251

Escudié F, Auer L,  Bernard M, Mariadassou M,  Cauquil L, Vidal K, Maman S, Hernandez-Raquet G, Combes S, Pasca G. 2018. FROGS: Find, Rapidly, OTUs with Galaxy Solutio. Bioinformatics. 34, 1287-1294

Eynard SE,Croiseau P, Laloë D, Fritz S,Calus MPL, Restoux G. 2018. Which individuals to choose to update the reference population? Minimizing the loss of genetic diversity in animal genomic selection programs. G3 (Bethesda). 8, 113-121.

Eynard SE, Windig JJ, Hulsegge I, Hiemstra SJ, Calus MPL. 2018. The impact of using old germplasm on genetic merit and diversityA cattle breed case study. J Anim Breed Sci. 135, 311-322

Fraslin C, Dechamp N, Bernard M, Krieg F, Hervet C, Guyomard R, Esquerré D, Barbieri J, Kuchly C, Duchaud E, Boudinot P, Rochat T, Bernardet JF, Quillet E. 2018. Quantitative trait loci for resistance to Flavobacterium psychrophilum in rainbow trout: effect of the mode of infection and evidence of epistatic interactions. Genet Sel Evol. 50, 60

Grobler R, Visser C, Capitan A, van Marie-Koster E. 2018. Validation of the POLLED Celtic variant in South African Bonsmara and Drakensberger beef cattle breeds. Livest Sci. 217, 136-139

He B, Tjhung KF, Bennett NJ, Chou Y, Rau A, Huang J, Derda R. 2018. Compositional bias in naïve and chemically-modified phage-displayed libraries uncovered by paired-end deep sequencing. Sci Rep. 8, 1214.

Hubert JN, Zerjal T, Hospital F. 2018. Cancer- and behavior-related genes are targeted by selection in the Tasmanian devil (Sarcophilus harrish). PLoS One. 13, e0201838

Lansade L, Foury A, Reigner F, Vidament M, Guettier E, Bouvet G, Soulet D, Parias C, Ruet A, Mach N, Levy F, Moisan MP. 2018. Progressive habituation to separation alleviates the negative effects of weaning in the mother and foal. Psychoneuroendocrinology. 97, 59-68

Legradi JB Di Paolo C, Kraak MHS, van der Geest HG, Schymanski EL, Williams AJ Dingemans, MML Massei, R, Brack W, Cousin X, Begout ML, van der Oost R, Carion A, Suarez-Ulloa V, Silvestre F, Escher BI, Engwall M, Nilen G, Keiter SH, Pollet D, Waldmann, P, Kienle C; Werner I, Haigis AC, Knapen D, Vergauwen L, Spehr M, Schulz W, Busch W, Leuthold D, Scholz S, vom Berg CM, Basu N, Murphy CA, Lampert, A, Kuckelkorn J, Grummt T, Hollert H. 2018. An ecotoxicological view on neurotoxicity assessment. Environ Sci Eur. 30, 46

Marete A, Guldbrandtsen B, Fritz S, Lund MS, Sahana G, Boichard D. 2018. A meta-analysis including pre-selected sequence variants associated with seven traits in three French dairy cattle populations. Front Genet. 9, 522

Maroilley T, Berri M, Lemonnier G, Esquerré D, Chevaleyre C, Mélo S, Meurens F, Coville JL, Leplat JJ, Rau A,  Bed’hom B, Vincent-Naulleau S, Mercat MJ, Billon Y, Lepage P, Rogel-Gaillard C, Estellé J. 2018. Immunome differences between porcine ileal and jejunal Peyer’s patches revealed by global transcriptome sequencing of gut-associated lymphoid tissues. Sci Rep, 8-9077

Mondet F, Rau A, Klopp C, Rohmer M, Severac D, Le Conte Y, Alaux C. 2018. Transcriptome profiling of the honeybee parasite Varroa destructor provides new biological insights into the mite adult life cycle. BMC Genomics, 19-328.

Muñoz M, Bozzi R, García F, Núñez Y, Geraci C, Crovetti A, García-Casco J, Alves E, Škrlep M, Charneca R, Martins JM, Quintanilla R, Tibau J, Kušec G, Djurkin-Kušec I, Mercat MJ, Riquet J, Estellé J, Zimmer C, Razmaite V, Araujo JP, Radović Č, Savić R, Karolyi D, Gallo M, Čandek-Potokar M, Fontanesi L, Fernández  AI, Óvilo C. 2018. Diversity across major and candidate genes in European local pig breed. PLoS One. 13, e0207475

Narayana SG, Miglior F, Naqvi SA, Malchiodi F, Martin P, Barkema HW. 2018. Genetic analysis of subclinical mastitis in early lactation of heifers using both linear and threshold models. J Dairy Sci. 101, 11120-11131

Rau A, Maugis-Rabusseau C. 2018. Transformation and model choice for RNA-seq co-expression analysis. Brief Bioinform. 19, 425-436.

Rigaill G, Balzergue S, Brunaud V, Blondet E, Rau A, Rogier O, Caius J, Maugis-Rabusseau C, Soubigou-Taconnat, L, Aubourg S, Lurin C, Martin-Magniette ML, Delannoy E. 2018. Synthetic data sets for the identification of key ingredients for RNA-seq differential analysis. Brief Bioinform. 19, 65-76.

Rochus CM, Tortereau F, Plisson-Petit F, Restoux G, Moreno-Romieux C, Tosser-Klopp G, Servin B. 2018. Revealing the selection history of adaptive loci using genome-wide scans for selection: an example from domestic sheep. BMC Genomics. 19, 71.

Song X, Marandel L, Skiba-Cassy S, Corraze G, Dupont-Nivet M, Quillet E, Geurden I, Panserat S. 2018. Regulation by dietary carbohydrates of intermediary metabolism in liver and muscle of two isogenic lines of Rainbow trout. Front Physiol. 9, 1579

Verrier ER, Genet C, Laloë D, Jaffrezic F, Rau A, Esquerre D, Dechamp N, Ciobotaru C, Hervet H, Krieg F, Jouneau L, Klopp C, Quillet E, Boudinot P. 2018.  Genetic and transcriptomic analyses provide new insights on the early antiviral response to VHSV in resistant and susceptible rainbow trout. BMC Genomics. in press.

Vanbergue E, Peyraud JL, Ferlay A, Miranda G, Martin P, Hurtaud C. 2018. Effects of feeding level, type of forage and milking time on milk lipolytic system in dairy cows. Livest Sci. 217, 116-126

Wang S, Laloë D, Missant FM, Malm S, Lewis T, Verrier E, Strandberg E, Bonnet  BN,  Leroy G. 2018. Breeding policies and management of pedigree dogs in 15 national kennel clubs. Vet J. 234, 130-135.

2017

Beaumont M, Andriamihaja M, Arman L, Grauso M, Jaffrézic F, Laloë D, Moroldo M, Davila AM, Tomé D, Blachier F and Lan A. 2017. Epithelial response to a high-protein diet in rat colon. BMC Genomics. 18, 116

Danchin-Burge C, Danvy S, Laloë D, Verrier E. 2017. Création d’un observatoire de la VARiabilité génétique des RUMinants et des Equidés (VARUME).  Innovations Agronomiques. 55, 235-245

Duchesne A, Vaiman A, Castille J, Beauvallet C, Gaignard P, Floriot S, Rodriguez S, Vilotte M, Boulanger L, Passet B, Albaric O, Guillaume F, Boukadiri A, Richard L, Bertaud M, Timsit E, Guatteo R, Jaffrézic F, Calvel P, Helary L, Mahla R, Esquerré D, Péchoux C, Liuu S, Vallat JM, Boichard D, Slama A, Vilotte JL. 2017. Bovine and murine models highlight novel roles for SLC25A46 in mitochondrial dynamics and metabolism, with implications for human and animal health. PLoS Genet. 13, e1006597

Legrand E, Boulange-Lecomte C, Restoux G, Tremolet G,  Duflot A, Forget-Leray J. 2017. Individual and mixture acute toxicity of model pesticides chlordecone and pyriproxyfen in the estuarine copepod Eurytemora affinis. Environ Sci Pollut Res. 24, 5976-5984
Leroy G, Baumung R, Notter D, Verrier E, Wurzinger M, Scherf B. 2017. Stakeholder involvement and the management of animal genetic resources across the world. Livest Sci. in press.

Leroux S, Gourichon D, Leterrier C, Labrune Y, Coustham V, Rivière S, Zerjal T, Coville JL, Morisson M, Minvielle F, Pitel F. 2017. Embryonic environment and transgenerational effects in quail. Genet Sel Evol. 49, 14

Lien CY, Tixier-Boichard M, Wu SW, Wang WF, Ng CS, Chen CF.  2017. Detection of QTL for traits related to adaptation to sub-optimal climatic conditions in chickens. Genet Sel Evol. 49, 39.

Manirakiza J, Hatungumukama G, Thévenon S, Gautier M, Besbes B, Flori L, Detilleux J. 2017. Effect of genetic European taurine ancestry on milk yield of Ankole-Holstein crossbred dairy cattle in mixed smallholders system of Burundi highlands. Anim Genet. 48, 544-550

Monneret G, Jaffrézic F, Rau A, Zerjal T, Nuel G. 2017. Identification of marginal causal relationships in gene networks from observational and interventional expression data. PLoS One. 12, e0171142

O’Neill DG, Keijser, SFA, Hedhammar A, Kisko C, Leroy G, Llewellyn-Zaidi A, Malm S, Olson PN, Packer RMA, Rousselot JF, Seath IJ, Stull JW, Bonnett BN. 2017. Moving from information and collaboration to action: report from the 3rd international Dog Health Workshop, Paris in April 2017. Canine Genet Epidemiol. 4, 6

Phocas F, Belloc C, Bidanel J, Delaby L, Dourmad JY, Dumont B, Ezanno P, Fortun-Lamothe L,  Foucras G, Frappat B, Gonzalez-Garcia E, Hazard D, Larzul C, Lubac S, Mignon-Grasteau S, Moreno-Romieux C, Tixier-Boichard M, Brochard M. 2017. Quels programmes d’amélioration génétique des animaux pour des systèmes d’élevage agro-écologiques ? Inra Prod Anim. 30, 31-46.

Roy J, Tardieu F, Tixier-Boichard M, Schurr U. 2017. European infrastructures for sustainable agriculture. Nat Plants. 3, 756-758

Sauvage C, Rau A, Aichholz C, Chadoeuf J, Sarah G, Ruiz M, Santoni S, Causse M, David J, Glémin S. 2017. Domestication rewired gene expression and nucleotide diversity patterns in tomato. Plant J. ahead of print.

Schwochow Thalmann D, Ring H, Sundström E, Cao X, Larsson M, Kerje S, Höglund A, Fogelholm J, Wright D, Jemth P, Hallböök F, Bed'Hom B, Dorshorst B, Tixier-Boichard M, Andersson L. 2017. The evolution of Sex-linked barring alleles in chickens involves both regulatory and coding changes in CDKN2A. PLoS Genet. 13, e1006665.

Tiret M, Hospital F. Blocks of chromosomes identical by descent in a population: Models and predictions. PLoS One. 12, e0187416

Wang S, Leroy G, Malm S, Lewis T, Strandberg E, Fikse WF. 2017. Merging pedigree databases to describe and compare mating practices and gene flow between pedigree dogs in France, Sweden and the UK. J Anim Breed Genet. 134, 152-161.

2016

Barret P, Bourguet D, Duée PH, Gerber S, Le Roux X, Tixier-Boichard M. 2016. Éthique et biodiversité : questions posées à et par la recherche agronomique. Nature Sciences Sociétés. 24, 270-276

Boitard S, Boussaha M, Capitan A, Rocha D, Servin B. 2016. Uncovering adaptation from sequence data: Lessons from genome resequencing of four cattle breeds. Genetics. 203, Early Online

Chadi S, Polyte J, Lefevre L, Castille J, Ehanno A, Laubier J, Jaffrézic F, Le Provost F. 2016. Phenotypic and molecular alterations in the mammary tissue of R-spondin1 knock-out mice during pregnancy. PLoS One. 11, e0162566

Couix N, Gaillard C, Lauvie A, Mugnier S, Verrier E. 2016. Breeds both locally adapted and locally adopted, a condition for the sustainability of livestock activities. Cahiers Agriculture. 25, 650009

Davi H, Cailleret M, Restoux G, Amm A, Pichot C, Fady B. 2016. Disentangling the factors driving tree reproduction. EcoSphere. 7, e01389

Eynard SE, Windig JJ, Hiemstra SJ, Calus MPL. 2016. Whole‑genome sequence data uncover loss of genetic diversity due to selection. Genet Sel Evol. 48-33

Hubert JN, Allal F, Hervet C, Ravakarivelo M, Jeney Z, Vergnet A,  Guyomard R, Vandeputte M. 2016. How could fully scaled carps appear in natural waters in Madagascar ? Proc Royal Soc Biol Sci. 283, 1-8

Jimenez Mena B, Tataru P, Brondum RF, Sahana G, Guldbrandtsen B, Bataillon T. 2016. One size fits all? Direct evidence for the heterogeneity of genetic drift throughout the genome. Biol Lett. 12, 1-4

Jimenez Mena B, Hospital F, Bataillon T. 2016. Heterogeneity in effective population size and its implications in conservation genetics and animal breeding. Conservation Genet Res. 8, 35-41

Jimenez Mena B, Schad K, Hanna N, Lacy RC. 2016. Pedigree analysis for the genetic management of group-living species. Ecol Evol. 6, 3067- 3078 

Loyau T, Zerjal T, Rodenburg T B, Fablet J, Tixier-Boichard M, Pinard-Van der Laan MH, Mignon-Grasteau S. 2016. Heritability of body surface temperature in hens estimated by infrared thermography at normal or hot temperatures and genetic correlations with egg and feather quality. Animal, in press

Mahammi FZ, Gaouar SB, Laloë D, Faugeras R, Tabet-Aoul N, Rognon X, Tixier-Boichard M, Saidi-Mehtar N. 2016. A molecular analysis of the patterns of genetic diversity in local chickens from western Algeria in comparison with commercial lines and wild jungle fowls. J Anim Breed Genet. 133, 59-70

Mazet O, Rodriguez W, Grusea S, Boitard S, Chikhi L. 2016. On the importance of being structured: instantaneous coalescence rates and human evolution-lessons for ancestral population size inference? Heredity. 116, 362-371

Montazer-Torbati F, Boutinaud M, Brun N, Richard C, Neveu A, Jaffrézic F, Laloë D, LeBourhis D, Nguyen M, Chadi S, Jammes H, Renard JP, Chat S, Boukadiri A, Devinoy E. 2016. Differences during the first lactation between cows cloned by somatic cell nuclear transfer and non-cloned cows. J Dairy Sci. Preaccepted

Pham MH, Tran XH, Berthouly-Salazar C, Tixier-Boichard M, Chen CF, Lee YP. 2016. Monitoring of genetic diversity in Taiwan conserved chickens assessed by pedigree and molecular data. Livest Sci. 184, 85- 9

Phocas F, Belloc C, Bidanel J, Delaby L,  Dourmad JY, Dumont B, Ezanno P,  Fortun-Lamothe L, Foucras G, Frappat B, González-García E,  Hazard D, Larzul C, Lubac S, Mignon-Grasteau S, Moreno CR, Tixier-Boichard M, Brochard. 2016. Review: Towards the agroecological management of ruminants, pigs and poultry through the development of sustainable breeding programmes: I-selection goals and criteria. Animal. in press.

Phocas F, Belloc C, Bidanel J, Delaby L,  Dourmad JY, Dumont B, Ezanno P,  Fortun-Lamothe L, Foucras G, Frappat B, González-García E,  Hazard D, Larzul C, Lubac S, Mignon-Grasteau S, Moreno CR, Tixier-Boichard M, Brochard. 2016. Review: Towards the agroecological management of ruminants, pigs and poultry through the development of sustainable breeding programmes: II. Breeding strategies. Animal. in press.

Rigail G, Balzergue S, Brunaud V, Blondet E, Rau A, Rogier O, Caius J, Maugis Rabusseau C, Soubigou Taconnat L, Aubourg S, Lurin C, Martin Magniette ML, Delannoy E. 2016. Synthetic data sets for the identification of key ingredients for RNA-seq differential analysis. Brief Bioinform. pii: bbw092.

Roux PF, Frésard L, Boutin M, Leroux S, Klopp C, Djari A, Esquerré D, Martin PG, Zerjal T, Gourichon D, Pitel F, Lagarrigue S. 2016. The extent of mRNA editing is limited in chicken liver and adipose, but impacted by tissular context, genotype, age, and feeding as exemplified with a conserved edited site in COG3. G3 (Bethesda). 6, 321-335

Santana ML, Pereira RJ, Bignardi AB, Ayres DR, Menezes GRO, Silva LOC, Leroy G, Machado CHC, Josahkian LA, Albuquerque LG. 2016. Structure and genetic diversity of Brazilian Zebu cattle breeds assessed by pedigree analysis. Livest Sci. 187, 6-15

Simon M, Lopez-Garcia P, Deschamps P, Restoux G, Bertolino P, Moreira D, Jardillier L. 2016. Resilience of freshwater communities of small microbial eukaryotes undergoing severe drought events. Front Microbiol. 7, 812

Tuggle CK, Giuffra E, White SN, Clarke L, Zhou H, Ross PJ, Acloque H, Reecy JM, Archibald A, Bellone RR, Boichard M, et al. 2016. GO-FAANG meeting: a Gathering On Functional Annotation of Animal Genomes. Anim Genet. 47, 528-533

Wang S, Leroy G, Malm S, Lewis T, Strandberg E, Fikse WF. 2016. Merging pedigree databases to describe and compare mating practices and gene flow between pedigree dogs in France, Sweden and the UK. J Anim Breed Genet. 2016, 1-10

Previous publications

Barbillon P, Thomas M, Goldringer I, Hospital F, Robin S. 2015. Network impact on persistence in a finite population dynamic diffusion model: application to an emergent seed exchange network. J Theor Biol. 365, 365-376

Berber N, Gaouar S, Leroy G, Kdidi S, Tabet Aouel N, Saïdi Mehtar N. 2014. Molecular characterization and differentiation of five horse breeds raised in Algeria using polymorphic microsatellite markers. J Anim Breed Genet. 131, 387-394

Berthier D, Peylhard M, Dayo GK, Flori, L, Sylla S., Bolly S, Sakande H, Chantal I, Thevenon S. 2015. A comparison of phenotypic traits related to trypanotolerance in five west african cattle breeds highlights the value of shorthorn taurine breeds. PLoS One. 10, e0126498

Boerries M., Grahammer F., Sven Eiselein S., Buck M., Meyer C., Goedel M., Bechtel W., Zschiedrich S., Pfeifer D., Laloe D., Arrondel C., Goncalves S., Kruger M., Harvey SJ., Busch H., Dengjel J., Huber T.B. 2013. Molecular fingerprinting of the podocyte reveals novel gene and protein regulatory networks. Kidney International 83, 1052-1064

Boije H, Harun-or-Rashid M, Lee YJ, Imsland F, Bruneau N, Vieaud A, Gourichon D, Tixier-Boichard M, Bed’Hom B, Andersson L, Hallböök F. 2013. Sonic Hedgehog-Signalling Patterns the Developing Chicken Comb as Revealed by Exploration of the Peacomb. Plos One. 7, e50890

Bonhomme M, Boitard S, Clemente HS, Dumas B, Young N, Jacquet C. 2015. Genomic Signature of Selective Sweeps Illuminates Adaptation of Medicago truncatula to Root-Associated Microorganisms. Mol Biol Evol. 32, 2097-2110 

Brenaut P, Lefèvre L,  Rau A,  Laloë D, Pisoni G,  Moroni P, Bevilacqua C and Martin P. 2014. Contribution of mammary epithelial cells to the immune response during early stages of a bacterial infection to Staphylococcus aureus. Vet Res. 45, 16

Bruford MW, Ginja C., Hoffmann I., Joost S., Orozco-terWengel P., J. Alberto F., J. Amaral A., Barbato M., Biscarini F., Colli L., Costa M., Curik I., Duruz S., Ferenčaković M., Fischer D., Fitak R., F. Groeneveld L., J. G. Hall S., Hanotte O., Hassan FU, HelsenP., Iacolina L., Kantanen K., Leempoel K., A. Lenstra J., Ajmone-Marsan P., Masembe C., Megens HJ, Miele M., Neuditschko M., Nicolazzi E.L., Pompanon F., Roosen J., Sevane N., Smetko A., Štambuk A., Streeter I., Stucki S., Supakorn C., Telo Da Gama L., Tixier-Boichard M., Wegmann D., Zhan X. 2015. Challenges for the conservation of farm animal genomic resources. Front Genet. 6, 314

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Gallopin M, Celeux G, Jaffrezic F, Rau A. 2015. A model selection criterion for model-based clustering of annotated gene expression data. Stat Appl Genet Mol Biol. 14, 413-428

Gallopin M., Rau A., Jaffrezic F. 2013. A Hierarchical Poisson Log-Normal Model for Network Inference from RNA Sequencing Data. Plos One 8, e77503

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